From Alan Zelicoff, MD (full webpage site: http://www.zelicoff.com):
[This page last updated on 5/23/09]


5/3/09: Commentary on Influenza A/H1N1
(Mexico Origin?)
A new influenza strain variously called “novel Influenza A” or Influenza A/H1N1 “swine-origin influenza virus (S-OIV”) has been isolated which is clearly causing disease (and some deaths) in Mexico (where it apparently originated) and elsewhere.  The outbreak – now confirmed as occurring on several continents – is by definition a “pandemic”.  The minimal set of questions facing public health officials and political decision-makers are:

(1) will this turn into a severe pandemic that causes both severe illness and mortality?;
(2) will it continue to spread?; and
(3) if it does appear to abate, will it return in the next influenza season, perhaps with more severe manifestations necessitating a change in the annual influenza vaccine at great expense, and perhaps approaching a critical limit on the amount of influenza vaccine that can be produced in time?

It now appears clear that the pandemic while widespread is not severe (pandemics don't have to be "severe" in order to be pandemics, a point often overlooked).  I believe that there is sufficient evidence to conclude that there is widespread immunity (not fully protective, but protective enough) so that while there will certainly continue to be new cases -- just as there are of seasonal influenza A in the northern hemisphere, soon to be followed in a few weeks in the southern hemisphere -- I don't expect high mortality, at least in the short run.  However, whenever a new strain of influenza A enters into circulation and is easily transmissible from human to human, there is always a concern that a reassortment or recombination event may take place.  In both of these phenomena, a single host (usually thought to be a pig or a bird, but humans are not excluded) can be infected with two strains of influenza and when virus replication occurs, reassembly of the virus inside of host cells can result in random shuffling of the 8 genes making up the genome of the influenza virus (reassortment) or there may be cross-over of strands of homologous RNA during replication (recombination).  Out of these genetic events may emerge a new influenza strains with either different (e.g. enhanced) virulence properties or even extended host range (affecting, for example, other mammalian species).  I have pictured these phenomena below:

Recombination and Reassortment of Influenza Genes

I have prepared a working document that I hope will provide both up-to-date information and some useful analysis, highlighting uncertainties and statistically meaningful trends so that serious readers can augment their understanding of influenza per se, and judge the policy decisions that are being made.  This particular influenza – very much unlike H5N1 “avian” flu – spreads easily from person-to-person.  This transmissibility does not mean that there will be another global pandemic on the impact scale of the devastating 1918 flu (or even the mild but nonetheless significant pandemics of 1957, 1977 and 1968), but it does give cause for pause and careful thinking.  My conclusions at the moment are:

(a) the CDC/WHO recommendations for prudent self-isolation if one develops flu-like illness along with handwashing and other common sense precautions are reasonable;
(b) it does not appear that this pandemic is any more severe than recent seasonal influenza A episodes
(c) there is probably some pre-existing immunity in adults (and some younger people) in most of the northern hemisphere above the Tropic of Cancer and in the southern hemisphere below the Tropic of Capricorn because of exposure either to circulating strains of influenza A or previous vaccination.  This may explain the mild illness experienced so far in the US, Canada, New Zealand, Spain, the UK and several other countries where seasonal Influenza A is common (or where vaccination is common).

Lessons learned
Perhaps the most important lesson from this novel influenza outbreak is that the US and most of the rest of the world lack a real-time, species neutral disease surveillance system that can identify unusual (or unusually severe) symptoms in human and animal populations early in the course of an outbreak.  Despite improvements in the International Health Regulations of 2005 that call upon member nations of the WHO to report any disease outbreaks of potential public health significance, the tools to realize this necessary and laudable goal have not been implemented.  However, I believe such tools exist (see updates below for more information).


My updates (hopefully timely and accurate) can be read  here by date:


I welcome comments and suggestions for improving (or correcting) this document.  All errors are mine and mine alone. 

My e-mail address is: zalan8587@qwest.net